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Index

A

Attention1D_MIL (class in best.deep_learning.models_generic)

attenuate() (best.feature_extraction.FeatureExtractor.SleepSpectralFeatureExtractor method) augment_features() (in module best.feature)

B

balance_classes() (in module best.feature) best.cloud module best.dbs module best.dbs.artifact_bank module best.dbs.artifact_removal module best.dbs.artifact_removal._remove_stimulation_artifacts module best.dbs.artifact_removal.dataset module best.dbs.artifact_removal.model module best.dbs.artifact_removal.trainer module best.deep_learning module best.deep_learning.models_generic module best.erp module best.erp.crp module best.feature module best.feature_extraction module best.feature_extraction.FeatureExtractor module best.feature_extraction.SpectralFeatures module

best.feature_extraction.WaveDetector module best.files module best.modules module best.modules.feature module best.modules.stats module best.signal module best.signal_generation module best.signal_generation.DCGAN module best.signal_generation.DCGAN.dataset module best.signal_generation.DCGAN.model module best.signal_generation.DCGAN.trainer module best.sleep_classification module best.sleep_classification.models module best.stats module best.types module best.vector module buffer() (in module best.signal)

C

ccep_proj() (in module best.erp.crp) combine_gauss_distributions() (in module best.stats) combine_mvgauss_distributions() (in module best.stats) compare_datasets() (in module best.stats)

continuous_learning (best.modules.feature.ZScoreModule attribute) correct_certainty() (best.sleep_classification.models.SleepStageProbabilityMarkovChainFilter method) create_folder() (in module best.files) create_template() (best.sleep_classification.models.Mapper method) crp_method() (in module best.erp.crp)

D

DatasetTimeDomain (class in best.signal_generation.DCGAN.dataset) dbs_artifact_removal_network (class in best.dbs.artifact_removal.model) dbs_artifact_removal_network_ (class in best.dbs.artifact_removal.model) dbs_artifact_removal_network_v2 (class in best.dbs.artifact_removal.model) decimate() (best.signal.LowFrequencyFilter method) (in module best.signal) delta_t_stats() (best.feature_extraction.WaveDetector.WaveDetector class method) design_filters() (best.feature_extraction.FeatureExtractor.SleepSpectralFeatureExtractor method) (best.signal.LowFrequencyFilter method) detect_waves() (best.feature_extraction.WaveDetector.WaveDetector method) detrend() (in module best.signal) device() (best.dbs.artifact_removal.dataset.StimArtifactDataset property) (best.dbs.artifact_removal.dataset.StimArtifactDataset_RCS property) (best.dbs.artifact_removal.model.dbs_artifact_removal_network property) (best.dbs.artifact_removal.model.dbs_artifact_removal_network_ property) (best.dbs.artifact_removal.model.dbs_artifact_removal_network_v2 property)

DicToObj() (in module best.types) DictToObjDict() (in module best.types) Discriminator (class in best.signal_generation.DCGAN.model) DiscriminatorTimeFreq (class in best.signal_generation.DCGAN.model) do_epoch() (best.dbs.artifact_removal.trainer.Trainer method) (best.dbs.artifact_removal.trainer.Trainer_ method) (best.dbs.artifact_removal.trainer.TrainerLight method) (best.dbs.artifact_removal.trainer.TrainerUpgrade method) (best.signal_generation.DCGAN.trainer.Trainer method)

E

eval() (best.signal_generation.DCGAN.dataset.DatasetTimeDomain method) extract_features() (best.sleep_classification.models.KDEBayesianModel method) (best.sleep_classification.models.KDEBayesianModelNC method) (best.sleep_classification.models.MultiChannelMVGaussBayesClassifier method)

extract_features_bulk() (best.sleep_classification.models.KDEBayesianModel method) (best.sleep_classification.models.KDEBayesianModelNC method) (best.sleep_classification.models.MultiChannelMVGaussBayesClassifier method) extraction_functions() (best.feature_extraction.FeatureExtractor.SleepSpectralFeatureExtractor property)

F

FeatureAugmentorModule (class in best.modules.feature) fft_filter() (in module best.signal) filter_signal() (best.signal.LowFrequencyFilter method) find_category_outliers() (in module best.feature) find_peaks() (in module best.signal) fit() (best.modules.feature.FeatureAugmentorModule method) (best.modules.feature.Log10Module method) (best.modules.feature.LogModule method) (best.modules.feature.PCAModule method) (best.modules.feature.PCAModuleSVD method) (best.modules.feature.ZScoreModule method) (best.sleep_classification.models.KDEBayesianCausalModel method) (best.sleep_classification.models.KDEBayesianModel method) (best.sleep_classification.models.KDEBayesianModelNC method) (best.sleep_classification.models.MultiChannelMVGaussBayesClassifier method) (best.sleep_classification.models.SleepStageProbabilityMarkovChainFilter method) (best.sleep_classification.models.SleepStructureClassifier method) fit_genetic() (best.sleep_classification.models.Mapper method) fit_genetic_likelihood() (best.sleep_classification.models.Mapper method)

fit_map() (best.sleep_classification.models.Mapper method) fit_optimize() (best.sleep_classification.models.SleepStageProbabilityMarkovChainFilter method) fit_transform() (best.modules.feature.FeatureAugmentorModule method) (best.modules.feature.Log10Module method) (best.modules.feature.LogModule method) (best.modules.feature.PCAModule method) (best.modules.feature.PCAModuleSVD method) (best.modules.feature.ZScoreModule method) (best.sleep_classification.models.KDEBayesianModel method) (best.sleep_classification.models.KDEBayesianModelNC method) (best.sleep_classification.models.MultiChannelMVGaussBayesClassifier method) forward() (best.dbs.artifact_removal.model.dbs_artifact_removal_network method) (best.dbs.artifact_removal.model.dbs_artifact_removal_network_ method) (best.dbs.artifact_removal.model.dbs_artifact_removal_network_v2 method) (best.deep_learning.models_generic.Attention1D_MIL method) (best.deep_learning.models_generic.ResLayer1D method) (best.deep_learning.models_generic.ResLayer2D method) (best.signal_generation.DCGAN.model.Discriminator method) (best.signal_generation.DCGAN.model.DiscriminatorTimeFreq method) (best.signal_generation.DCGAN.model.Generator method)

G

generate_signal() (best.signal_generation.DCGAN.model.Generator method) Generator (class in best.signal_generation.DCGAN.model) get_changing_state_posteriors() (best.sleep_classification.models.SleepStageProbabilityMarkovChainFilter method) get_changing_state_priors() (best.sleep_classification.models.SleepStageProbabilityMarkovChainFilter method) get_changing_state_probabilities() (best.sleep_classification.models.SleepStageProbabilityMarkovChainFilter method) get_class_count() (in module best.stats) get_classification_scores() (in module best.feature) get_datarate() (in module best.signal) get_files() (in module best.files) get_folders() (in module best.files) get_mutual_vectors() (in module best.vector)

get_prob_to_change() (best.sleep_classification.models.SleepStageProbabilityMarkovChainFilter method) get_probabilities() (best.sleep_classification.models.Mapper method) get_rot_2d() (in module best.vector) get_rot_3d() (in module best.vector) get_rot_3d_x() (in module best.vector) get_rot_3d_y() (in module best.vector) get_rot_3d_z() (in module best.vector) get_stat_indices() (in module best.erp.crp) get_state_change_posterior() (best.sleep_classification.models.SleepStageProbabilityMarkovChainFilter method) get_state_change_prior() (best.sleep_classification.models.SleepStageProbabilityMarkovChainFilter method) get_state_idx() (best.sleep_classification.models.SleepStageProbabilityMarkovChainFilter method) get_state_priors() (best.sleep_classification.models.SleepStageProbabilityMarkovChainFilter method)

K

KDEBayesianCausalModel (class in best.sleep_classification.models) KDEBayesianModel (class in best.sleep_classification.models) KDEBayesianModelNC (class in best.sleep_classification.models)

kl_divergence() (in module best.stats) kl_divergence_mv() (in module best.stats) kl_divergence_nonparametric() (in module best.stats) kt_pca() (in module best.erp.crp)

L

Log10Module (class in best.modules.feature)

LogModule (class in best.modules.feature) LowFrequencyFilter (class in best.signal)

M

map() (best.sleep_classification.models.Mapper method) Mapper (class in best.sleep_classification.models) max_stats() (best.feature_extraction.WaveDetector.WaveDetector class method) mean (best.modules.feature.ZScoreModule attribute) mean_bands() (in module best.feature_extraction.SpectralFeatures) mean_frequency() (in module best.feature_extraction.SpectralFeatures) median_frequency() (in module best.feature_extraction.SpectralFeatures) MergeDataset_ThreeSeconds (class in best.signal_generation.DCGAN.dataset) min_stats() (best.feature_extraction.WaveDetector.WaveDetector class method) module best.cloud best.dbs best.dbs.artifact_bank best.dbs.artifact_removal best.dbs.artifact_removal._remove_stimulation_artifacts best.dbs.artifact_removal.dataset best.dbs.artifact_removal.model best.dbs.artifact_removal.trainer best.deep_learning best.deep_learning.models_generic best.erp best.erp.crp best.feature best.feature_extraction best.feature_extraction.FeatureExtractor best.feature_extraction.SpectralFeatures best.feature_extraction.WaveDetector best.files best.modules best.modules.feature best.modules.stats best.signal best.signal_generation best.signal_generation.DCGAN best.signal_generation.DCGAN.dataset best.signal_generation.DCGAN.model best.signal_generation.DCGAN.trainer best.sleep_classification best.sleep_classification.models best.stats best.types best.vector

multi_class (best.modules.feature.ZScoreModule attribute) MultiChannelMVGaussBayesClassifier (class in best.sleep_classification.models) multivariate_normal_ (class in best.modules.stats) MVGaussBayesianCausalModel (class in best.sleep_classification.models) MVGaussBayesianModel (class in best.sleep_classification.models)

N

N (best.modules.feature.ZScoreModule attribute) nandecimate() (in module best.signal) non_normalized_entropy() (in module best.feature_extraction.SpectralFeatures)

non_normalized_entropy_bands() (in module best.feature_extraction.SpectralFeatures) normalized_entropy() (in module best.feature_extraction.SpectralFeatures) normalized_entropy_bands() (in module best.feature_extraction.SpectralFeatures)

O

ObjDict (class in best.types)

ObjDictToDict() (in module best.types)

P

PCAModule (class in best.modules.feature) PCAModuleSVD (class in best.modules.feature) pdf() (best.modules.stats.multivariate_normal_ method) pk2pk_stats() (best.feature_extraction.WaveDetector.WaveDetector class method) plot_to_file() (best.dbs.artifact_removal.trainer.Trainer method) (best.dbs.artifact_removal.trainer.Trainer_ method) (best.dbs.artifact_removal.trainer.TrainerLight method) (best.dbs.artifact_removal.trainer.TrainerUpgrade method) (best.signal_generation.DCGAN.trainer.Trainer method) predict() (best.sleep_classification.models.KDEBayesianModel method) (best.sleep_classification.models.KDEBayesianModelNC method) (best.sleep_classification.models.MultiChannelMVGaussBayesClassifier method) (best.sleep_classification.models.SleepStageProbabilityMarkovChainFilter method) predict_signal() (best.sleep_classification.models.KDEBayesianModel method) (best.sleep_classification.models.KDEBayesianModelNC method) (best.sleep_classification.models.MultiChannelMVGaussBayesClassifier method) (best.sleep_classification.models.SleepClassifierWrapper method)

predict_signal_scores() (best.sleep_classification.models.KDEBayesianModel method) (best.sleep_classification.models.KDEBayesianModelNC method) (best.sleep_classification.models.MultiChannelMVGaussBayesClassifier method) prefilter() (best.feature_extraction.FeatureExtractor.SleepSpectralFeatureExtractor method) preprocess_signal() (best.sleep_classification.models.KDEBayesianModel method) (best.sleep_classification.models.KDEBayesianModelNC method) (best.sleep_classification.models.MultiChannelMVGaussBayesClassifier method) print_classification_scores() (in module best.feature) print_losses_to_file() (best.dbs.artifact_removal.trainer.Trainer method) (best.dbs.artifact_removal.trainer.Trainer_ method) (best.dbs.artifact_removal.trainer.TrainerLight method) (best.dbs.artifact_removal.trainer.TrainerUpgrade method) (best.signal_generation.DCGAN.trainer.Trainer method) process_signal() (best.feature_extraction.FeatureExtractor.SleepSpectralFeatureExtractor method) PSD() (in module best.signal)

R

RCSDataset (class in best.dbs.artifact_removal.dataset) relative_bands() (in module best.feature_extraction.SpectralFeatures) remove_artifacts() (in module best.dbs.artifact_removal._remove_stimulation_artifacts) remove_class() (best.sleep_classification.models.SleepStageProbabilityMarkovChainFilter method) remove_features() (in module best.feature) remove_folder() (in module best.files)

remove_samples() (in module best.feature) replace_annotations() (in module best.feature) resample() (in module best.signal) reset_probabilities() (best.sleep_classification.models.SleepStageProbabilityMarkovChainFilter method) ResLayer1D (class in best.deep_learning.models_generic) ResLayer2D (class in best.deep_learning.models_generic) rotate() (in module best.vector)

S

save_model() (best.dbs.artifact_removal.trainer.Trainer method) (best.dbs.artifact_removal.trainer.Trainer_ method) (best.dbs.artifact_removal.trainer.TrainerLight method) (best.dbs.artifact_removal.trainer.TrainerUpgrade method) (best.signal_generation.DCGAN.trainer.Trainer method) scale() (in module best.vector) scores() (best.sleep_classification.models.KDEBayesianCausalModel method) (best.sleep_classification.models.KDEBayesianModel method) (best.sleep_classification.models.KDEBayesianModelNC method) (best.sleep_classification.models.MultiChannelMVGaussBayesClassifier method) (best.sleep_classification.models.SleepStructureClassifier method) SingleDataset_ThreeSeconds (class in best.signal_generation.DCGAN.dataset)

SleepClassifierWrapper (class in best.sleep_classification.models) SleepSpectralFeatureExtractor (class in best.feature_extraction.FeatureExtractor) SleepStageProbabilityMarkovChainFilter (class in best.sleep_classification.models) SleepStructureClassifier (class in best.sleep_classification.models) slope_stats() (best.feature_extraction.WaveDetector.WaveDetector class method) slow_wave_detect() (in module best.feature_extraction.WaveDetector) split_files() (in module best.files) stat() (best.feature_extraction.WaveDetector.WaveDetector static method) std (best.modules.feature.ZScoreModule attribute) StimArtifactDataset (class in best.dbs.artifact_removal.dataset) StimArtifactDataset_RCS (class in best.dbs.artifact_removal.dataset) stimulation_artifacts (in module best.dbs.artifact_bank)

T

to() (best.dbs.artifact_removal.dataset.StimArtifactDataset method) (best.dbs.artifact_removal.dataset.StimArtifactDataset_RCS method) train() (best.dbs.artifact_removal.trainer.Trainer method) (best.dbs.artifact_removal.trainer.Trainer_ method) (best.dbs.artifact_removal.trainer.TrainerLight method) (best.dbs.artifact_removal.trainer.TrainerUpgrade method) (best.signal_generation.DCGAN.dataset.DatasetTimeDomain method) (best.signal_generation.DCGAN.trainer.Trainer method) (best.sleep_classification.models.SleepClassifierWrapper method) trainable (best.modules.feature.ZScoreModule attribute) Trainer (class in best.dbs.artifact_removal.trainer) (class in best.signal_generation.DCGAN.trainer) Trainer_ (class in best.dbs.artifact_removal.trainer) TrainerLight (class in best.dbs.artifact_removal.trainer) TrainerUpgrade (class in best.dbs.artifact_removal.trainer) training (best.dbs.artifact_removal.model.dbs_artifact_removal_network attribute) (best.dbs.artifact_removal.model.dbs_artifact_removal_network_ attribute) (best.dbs.artifact_removal.model.dbs_artifact_removal_network_v2 attribute) (best.deep_learning.models_generic.Attention1D_MIL attribute) (best.deep_learning.models_generic.ResLayer1D attribute) (best.deep_learning.models_generic.ResLayer2D attribute) (best.signal_generation.DCGAN.model.Discriminator attribute) (best.signal_generation.DCGAN.model.DiscriminatorTimeFreq attribute) (best.signal_generation.DCGAN.model.Generator attribute)

transform() (best.modules.feature.FeatureAugmentorModule method) (best.modules.feature.Log10Module method) (best.modules.feature.LogModule method) (best.modules.feature.PCAModuleSVD method) (best.modules.feature.ZScoreModule method) (best.sleep_classification.models.KDEBayesianModel method) (best.sleep_classification.models.KDEBayesianModelNC method) translate() (in module best.vector) TwoWayDict (class in best.types)

U

unify_sampling_frequency() (in module best.signal)

upsample() (best.signal.LowFrequencyFilter method)

W

WaveDetector (class in best.feature_extraction.WaveDetector)

weight_probabilities() (best.sleep_classification.models.SleepStageProbabilityMarkovChainFilter method)

Z

zscore() (in module best.feature)

ZScoreModule (class in best.modules.feature)